FastQCFastQC Report
Wed 8 May 2024
EGAF00007823570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209826
Total Bases31.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT5330.25401999752175614No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAGGAAGAGGGTGTA2910.13868634011037717No Hit
CATCCTGGGCAGCCAACATAGCAGCATATGGTGAGGATTCATCTCGGTCT2910.13868634011037717No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC2740.1305843889699084No Hit
GTCCGAGGGTGCGGTGAAGAGGTGACGGAGGGCTGGCTATGGGCGGCCGG2630.1253419499966639No Hit
GTGTAGGAGGCCTGCAGGTACAAATTGACCAGGCTGTTGACGGCTGCCTC2620.12486536463545984No Hit
GCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCG2610.12438877927425582No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACAGGAAGAGGGTGGT2440.11628682813378703No Hit
GCCTTTACCTTCATCCCACCAGTCACACGGCAGATGGTTTCCTTGCCAGA2190.10437219410368592No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)