FastQCFastQC Report
Wed 8 May 2024
EGAF00007823578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405503
Total Bases61.2 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG6850.1689260005474682No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG5340.13168829823700443No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG5030.12404347193485622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)