FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007826454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62899060
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCCTTATCTCGTATGC19861563.1576878891353863TruSeq Adapter, Index 13 (97% over 37bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT843520.13410693259962866No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT757800.12047874801308636No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)