FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007826500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54812136
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGTTCCATCTCGTATGC6210741.133095780102421TruSeq Adapter, Index 14 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGTTCCATCTCGTTTGC1117060.20379793263302126TruSeq Adapter, Index 14 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGTTCCATCTGGTATGC825880.1506746608086939TruSeq Adapter, Index 14 (97% over 39bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT559300.10203944615477128No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)