FastQCFastQC Report
Sat 11 May 2024
EGAF00007826523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174155842
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCGGA4901058628.141798424424948No Hit
GCCATTCC4570881826.24592863212708No Hit
CAAGAATT4106546423.57972235005473No Hit
AGTTGCAG3649421220.954916918606727No Hit
GCCATTCA2307490.13249569888100565No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)