FastQCFastQC Report
Sat 11 May 2024
EGAF00007826526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183385950
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT5236753928.5559166337443No Hit
CCACTACA4712134925.69517948348824No Hit
GATTCTGG4278509523.33062865503055No Hit
ATGAAGAC3926631921.411846981734424No Hit
TGCGGCTA2385150.13006176318305737No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)