FastQCFastQC Report
Tue 7 May 2024
EGAF00007826532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192249094
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC7259424037.760510850573894No Hit
CATCACTT5439361428.293300565567293No Hit
ACAATTCA4965875225.830421858841113No Hit
GTGTGGAG118301236.1535390122566715No Hit
GTGGGGAG24155871.2564881059985644No Hit
CATCACTA2293670.119307194238325No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)