FastQCFastQC Report
Sun 5 May 2024
EGAF00007826535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193630636
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC7314668737.776401767331905No Hit
CATCACTT5488080128.34303606790818No Hit
ACAATTCA4981723125.727969514080407No Hit
GTGTGGAG121187426.2586903861638925No Hit
GTGGGGAG22971901.1863773457832365No Hit
CATCACTA2285090.11801283346505147No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)