FastQCFastQC Report
Fri 10 May 2024
EGAF00007826541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173341921
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTACAC5111799729.489691071324863No Hit
ATTGCGTG4777266427.559786879251213No Hit
CGACTTGA4285848924.72482637365026No Hit
TACAGACT3059968117.652787521605926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)