FastQCFastQC Report
Fri 10 May 2024
EGAF00007826544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146458555
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC4251231629.026857461484585No Hit
TCAGCCGT3753811525.63053759474822No Hit
GGTCAATA3594474024.542601830258395No Hit
ATCTTTAG2901977019.814322215591982No Hit
ATCGTTAG2966110.2025221401371876No Hit
ATCTGTAG2407730.16439667863717486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)