FastQCFastQC Report
Wed 22 May 2024
EGAF00007826546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146458555
Total Bases13.3 Gbp
Sequences flagged as poor quality0
Sequence length91
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT9837030.6716596377726108Clontech SMART CDS Primer II A (100% over 26bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1560510.10654959691497708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)