FastQCFastQC Report
Wed 22 May 2024
EGAF00007826549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148083456
Total Bases13.4 Gbp
Sequences flagged as poor quality0
Sequence length91
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT10156920.6858916096609738Clontech SMART CDS Primer II A (100% over 26bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1620660.10944234040566962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)