FastQCFastQC Report
Wed 8 May 2024
EGAF00007826550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132504589
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT3937729429.717683211711254No Hit
CGGGCTTA3403562825.68637679408975No Hit
TTCATCGG2921594722.049007676254895No Hit
AAACAAAC2857888221.56822055423303No Hit
CGGGCTAA1626860.12277763451649211No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)