FastQCFastQC Report
Wed 8 May 2024
EGAF00007826553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134102077
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT3987510129.734886954808314No Hit
CGGGCTTA3446539325.70086442434445No Hit
TTCATCGG2955766622.041169429463796No Hit
AAACAAAC2893735721.578604632648606No Hit
CGGGCTAA1651830.12317706309649477No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)