FastQCFastQC Report
Fri 10 May 2024
EGAF00007826562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144566796
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCTCC5670838239.2264223660321No Hit
AGCATGGT4464337430.880793678238533No Hit
GTTCACTG3318652022.9558383517056No Hit
TCGTGAAA86409775.977151904231176No Hit
CAAGCTCA2018780.13964340746681556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)