FastQCFastQC Report
Fri 10 May 2024
EGAF00007826565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146378105
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCTCC5744025539.24101558767959No Hit
AGCATGGT4524052430.90661953848904No Hit
GTTCACTG3358740622.94564887282835No Hit
TCGTGAAA87430195.972900796878058No Hit
CAAGCTCA2033650.13893129713627594No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)