FastQCFastQC Report
Fri 10 May 2024
EGAF00007826568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153944101
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT4237828527.528359141218413No Hit
CCTTTGTC4087861926.554196448228957No Hit
GTACGCGG3915663925.435621596179253No Hit
TAGGATAA3009477519.549157651711514No Hit
AGCACACA1793970.1165338579618585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)