FastQCFastQC Report
Sat 4 Feb 2023
EGAF00007826571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151431178
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT4166257027.51254434539233No Hit
CCTTTGTC4013447126.503439734187367No Hit
GTACGCGG3859535225.487057889756358No Hit
TAGGATAA2958831319.539115650279097No Hit
AGCACACA1780090.11755108977624146No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)