FastQCFastQC Report
Sat 4 Feb 2023
EGAF00007826589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166022878
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC6104169436.7670376127319No Hit
CTAGGTGA5226910731.483074880800466RNA PCR Primer, Index 38 (100% over 8bp)
AGCCAATT4990200330.057305114298767No Hit
TCGTTCAG10369400.62457657191077No Hit
NATACGCC1748310.10530536640859821No Hit
AGCCAATA1729740.104186845863496No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)