FastQCFastQC Report
Wed 8 May 2024
EGAF00007826592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109919214
Total Bases879.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATGT2921146526.575394725802898No Hit
GCTGTCCA2920059526.565505644900263No Hit
AAACCGAG2537748923.087400352044003No Hit
TTGAGATC2412904221.951614392002476No Hit
TGGAGATC3397540.30909427718433286No Hit
AACCCGAG2624650.23877990976172736No Hit
GTGAGATC1759560.1600775638734098No Hit
CGCGATGT1107600.10076491267486684No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)