FastQCFastQC Report
Sat 4 Feb 2023
EGAF00007826595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109821323
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATGT2917080326.562057534127504No Hit
GCTGTCCA2916382426.555702666229948No Hit
AAACCGAG2535106923.083922418235662No Hit
TTGAGATC2411019321.954017982464116No Hit
TGGAGATC3440010.3132369840417967No Hit
AACCCGAG2567760.23381251744708995No Hit
GTGAGATC1716310.15628203641291047No Hit
CGCGATGT1205760.10979288603179549No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)