FastQCFastQC Report
Sun 5 May 2024
EGAF00007826601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174194905
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT5247590230.12482024086755No Hit
GGATGCCG4654585126.72055821609708No Hit
ATGCTGAA3693439121.202911187327782No Hit
TATGATTC3631381820.846659091435537No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)