FastQCFastQC Report
Sun 5 May 2024
EGAF00007826604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171458377
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG6105078535.60676711642966No Hit
TTTCATGA5706772533.28371934839906No Hit
GAAGGAAC3581430220.888044449411765No Hit
ACGTCCCT155100489.045955217457822No Hit
CGCATGTA1912600.11154893878413419No Hit
CGCAGGTG1793680.10461314468175562No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)