FastQCFastQC Report
Tue 7 May 2024
EGAF00007826607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007826607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170750631
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG6073412935.56890457406274No Hit
TTTCATGA5685340733.29616216762326No Hit
GAAGGAAC3570117220.90836900040504No Hit
ACGTCCCT154234789.032750221578976No Hit
CGCATGTA1892340.110824773467455No Hit
CGCAGGTG1800700.10545788261245137No Hit
NGCATGTG1736390.10169157149410475No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)