FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007829326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007829326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12657866
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN461220.36437421600133857No Hit
CTCCCGTCCACTTTGCCCTCTTCCAGGCTGAAATCTTGCTTTCAGGCAAG136570.1078933842402819No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC133240.10526260903694193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)