FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007829369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007829369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25727047
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGCATACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA4048041.5734569148180901TruSeq Adapter, Index 10 (97% over 37bp)
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTTCAGGTTTAAATTTATCTTTTTTCTT276600.10751331079699898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)