FastQCFastQC Report
Sun 21 May 2023
EGAF00007832389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63592
Sequences flagged as poor quality0
Sequence length247-250
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA2225734.99968549503082No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC2216834.859730783746386No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC45237.112529877972072No Hit
GGAAGTAAAAGTCGTAACAAGGGGAGGTGTGGTGTTCCAAGCAAGGCAGG30454.788338155742861No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC10211.6055478676563089No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC8981.4121273116115234No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG6070.954522581456787No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC5240.8240030192477041No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC5200.8177129198641337No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT5010.7878349477921751No Hit
GGAAGTAAAAGTCGTAACAAGGCAACTATCTTAATTATTCTCAATGACAG4000.629009938357026No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC2020.31765001887029815No Hit
GGAAGTAAAAGTCGTAACAAGGGAAGGTGTGGTGTTCCAAGCAAGGCAGG1770.278336897722984No Hit
GGAAGTAAAAGTCGTAACAAGGGGTATAAGCTGAGCATTGAAGAGAAAAA1590.25003145049691783No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTGAACCTGCGGAAGGATC1360.21386337904138886No Hit
GGAAGTAAAAGTCGTAACAAGGTATCGGTAGGTGAACCTGCCGATGGATC1240.19499308089067807No Hit
GGAAGTAAAAGTCGTAACAAGGTTGATAAGGAACACCAACGCACCCAGGA1110.17455025789407472No Hit
GGAAGTAAAAGTCGTAACAAGGATGCGACTGAATAACGTGGTCGATTAAC1040.16354258397282675No Hit
GGAAGTAAAAGTCGTAACAAGGAGGGCGCCTGAGATGGGTAAACAAGAGG1030.1619700591269342No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCTGAAGGATC1010.15882500943514907No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACATCTCCGGCA960.15096238520568625No Hit
GGAAGTAAAAGTCGTAACAAGAGCAGAAGGAATTCAGAAGAGCCAGGGTG940.14781733551390114No Hit
GGAAGTAAAAGTCGTAACAAGCCAAAACCTGTGACATCAGTCATCGCTTT940.14781733551390114No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTATCCGGCA880.13838218643854572No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC860.1352371367467606No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGAAACCTCTCCGGCA830.1305195622090829No Hit
GGAAGTAAAAGTCGTAACAAGGTGAGTGATAAATTTTGCGGGATAAAACA760.11951188828783495No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACAACTCTCCGGCA750.11793936344194238No Hit
GGAAGTAAAAGTCGTAACAAGGTAGGCCCTGACTACATCGACCCCGGCTA740.11636683859604982No Hit
GGAAGTAAAAGTCGTAACAAGGAACTGAATGAGGCTTTTGCCGAGTTTAA720.11322178890426468No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGAAAACAGAATCCGAAAAGAGCACA710.11164926405837212No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC670.10535916467480186No Hit
GGAAGTAAAAGTCGTAACAAGGGCGTGGGGCAGAAGGTGGAAAATGCGCG660.1037866398289093No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)