FastQCFastQC Report
Wed 8 May 2024
EGAF00007832474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62898
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length235-238
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG2445338.87722980062959No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT757312.040128461954275No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA29994.768037139495691No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT29464.6837737288944No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT25594.068491843937804No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG21543.4245921968902033No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG16752.6630417501351396No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT11631.8490254062132343No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG11411.81404814143534No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT11151.7727113739705556No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG10511.6709593309803175No Hit
GCTGCGTTCTTCATCGATGCGCAAGGATAAGAACACGCTTACCCCTGCGA9821.5612579096314667No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGGGAGTCA6200.9857229164679323No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTCGCAAATCA3430.5453273554008076No Hit
GCTGCGTTCTTCATCGATGCTCGTGCGCCGTTCCGATACGATGGATCTCA3370.5357881013704728No Hit
GCTGCGTTCTTCATCGATGCGGGAGCCTAGACATCCGTCGTTGAGAGTTG3010.47855257718846383No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG2510.3990587936023403No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG2350.3736207828547808No Hit
GCTGCGTTCTTCATCGATGCGTGAGCCGAGATATCCGTTGCCGAGAGTCG2250.35772202613755605No Hit
GCTGCGTTCTTCATCGATGCTGTCCATGGTCACGCGATGCTCTCCTCGAT2150.3418232694203313No Hit
GCTGCGTTCTTCATCGATGTCTTCCTTTGTAGCATCAGCTGGGAAAGTCA2100.33387389106171894No Hit
GCTGCGTTCTTCATCGACTCTTGGTGCCAAGGCATCCGCCTTACGCCCTT2030.3227447613596617No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGCTTTTTTCTTTACGGT1930.30684600464243694No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT1550.24643072911698308No Hit
GCTGCGTTCTTCATCGATGCGTCGGACAGTCACAATCAACTCACATGCGG1490.23689147508664823No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG1490.23689147508664823No Hit
GCTGCGTTCTTCATCGATGCCGCCTTCCTTCACAACAGACCAGAAGGTCT1450.23053197239975834No Hit
GCTGCGTTCTTCATCGATGTGTTTTGGTAAGGGCAACTGGACCAAAATAC1410.22417246971286847No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACACGTGT1340.21304334001081118No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCGAAAGTTG1320.2098635886673662No Hit
GCTGCGTTCTTCATCGATGCCGCCAAAATCGGCAGGGAACTGGGCTGGAA1280.2035040859804763No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG1220.1939648319501415No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT1210.19237495627841902No Hit
GCTGCGTTCTTCATCGATGGGAGAACCTAGAGATCCGTTGTCGAAAGTTG1200.19078508060669655No Hit
GCTGCGTTCTTCATCGATGCCTTCCTTAACGTGGACAAAGGATTGGTCAA1190.18919520493497408No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCTTTGCCGAGAGTCG1160.18442557791980668No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTA1100.17488632388947184No Hit
TCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1070.17011669687430445No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT1040.165347069859137No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTAG1010.1605774428439696No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTCCACTTCGCAAATCAAAATAA1010.1605774428439696No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG930.1478584374701898No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC880.13990905911157747No Hit
GCTGCGTTCTTCATCGATGCCCTTGCCGAGCGCCACGGTGTTTCGTACTG880.13990905911157747No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG810.12877992940952018No Hit
GCTGCGTTCTTCATCGATGCATATGTGGTGTGGCCCACATTTCTGTATGC800.1271900537377977No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCTGAGAGTCG780.12401030239435278No Hit
GCTGCGTTCTTCATCGATGCGTCGTTATTCTACTTCGCAAATCAAAATAA780.12401030239435278No Hit
GCTGCGTTCTTCATCGAAACGTGCACGTTTCGTTGAAGATAGTACGCACG770.12242042672263029No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT770.12242042672263029No Hit
GCTGCGTTCTTCATCGAAACGGATATAGCTACCATCTTTTCTTCTGGTCT700.111291297020573No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACAATGTGTT690.10970142134885053No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT680.10811154567712804No Hit
GCTGCGTTCTTCATCGATGGGAGAACCTAGAGATCCATTGTCGAAAGTTG680.10811154567712804No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCT640.10175204299023816No Hit
GCTGCGTTCTTCATCGATGCGAGATCCGAGATATCCGTTGCCGAGAGTCG630.1001621673185157No Hit
GCTGCGTTCTTCATCGATGCGTTGTTATTCTACTTCGCAAATCAAAATAA630.1001621673185157No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)