FastQCFastQC Report
Sun 21 May 2023
EGAF00007832480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159998
Sequences flagged as poor quality0
Sequence length236-238
%GC59

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG7166544.79118488981113No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCGAT2058312.864535806697583No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT1700010.625132814160176No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT119867.491343641795522No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCGGC21991.3743921799022487No Hit
GCTGCGTTCTTCATCGATGGTCCGTACCTTGGCTGCGTTCTTCATCGATG21791.3618920236502956No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG21671.3543919298991238No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT11190.6993837422967787No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA9320.5825072813410168No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG9270.5793822422780285No Hit
GCTGCGTTCTTCATCGATTTCGCCCAACAATGCTTCAGGAGAAACGACAA8550.5343816797709972No Hit
GCTGCGTTCTTCATCGATGTCCGTACCTTGGCTGCGTTCTTCATCGATGT7960.4975062188277353No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT7380.4612557656970712No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA6930.43313041413017667No Hit
GCTGCGTTCTTCATCGATGCAGACAACGATCAAATCCAAGCCGCCCATGA6860.42875535944199306No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT5370.33562919536494207No Hit
GCTGCGTTCTTCATCGACTCCTGACGCCAAGGCATCCACCGTATGCCTTT5220.3262540781759772No Hit
GCTGCGTTCTTCATCGATGCAGCCCTTATCTGCAGCAGCTGGAATCTCTG5030.31437892973662174No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT4770.29812872660908263No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG4520.2825035312941412No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCTGC4310.26937836722959035No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT3840.24000300003750047No Hit
GCTGCGTTCTTCATCGATGCCGTACCTTGGCTGCGTTCTTCATCGATGCC3550.2218777734721684No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT3370.21062763284541058No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG3150.1968774609682621No Hit
GCTGCGTTCTTCATCGAAGAGGAACTCTGCCAAAGACTTGGCAAGTTCGG2970.18562732034150428No Hit
GCTGCGTTCTTCATCGATGCCTTTGCCGAAGACGAACCGTGGCGGGCCGT2860.17875223440293003No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG2850.1781272265903324No Hit
GCTGCGTTCTTCATCGATGTCCGTACCTTGGCTGCGTTCTTCATCGATGC2670.16687708596357453No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT2650.16562707033837923No Hit
GCTGCGTTCTTCATCGATGCCCGTACCTTGGCTGCGTTCTTCATCGATGC2510.15687696096201204No Hit
GCTGCGTTCTTCATCGAAGAGGAACTCTGCCAAGGCCTTGGCAAGTTCGG2490.1556269453368167No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCAGAGAGTCG2130.13312666408330104No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCAGTTGCCGAGAGTCG2080.13000162502031276No Hit
GCTGCGTTCTTCATCGATGCTCCGTACCTTGGCTGCGTTCTTCATCGATG2040.12750159376992212No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT1970.12312653908173853No Hit
GCTGCGTTCTTCATCGGTCCGTACCTTGGCTGCGTTCTTCATCGGTCCGT1910.11937649220615258No Hit
GCTGCGTTCTTCATCGATGCTAGAGCCGAGATATCCGTTGCCGAGAGTCG1860.11625145314316429No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTTCCGAGAGTCG1840.11500143751796899No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTAG1840.11500143751796899No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1820.11375142189277367No Hit
GCTGCGTTCTTCATCGATGGTCCGTACCTTGGCTGCGTTCTTCATCGGCT1810.11312641408017601No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA1760.11000137501718772No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGATATATCCGTTGCCGAGAGTCG1680.10500131251640644No Hit
GCTGCGTTCTTCATCGATGCCATTGAGGTGTTCATGGCGTTTAACCGCTG1630.10187627345341817No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCT1630.10187627345341817No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT1600.1000012500156252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)