FastQCFastQC Report
Sun 21 May 2023
EGAF00007832672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81884
Sequences flagged as poor quality0
Sequence length236-238
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG3307340.39006399296566No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT76999.402325240584242No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT70428.599970690244737No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCGAT64287.85012945141908No Hit
GCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGCCCGCGCT27443.3510820184651458No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT24282.9651702408284892No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT15621.907576571735626No Hit
GCTGCGTTCTTCATCGACTCTTGGTGCCAAGGCATCCGCCTTACGCCCTT14761.8025499487079284No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG9001.0991158223828832No Hit
GCTGCGTTCTTCATCGATGGTCCGTACCTTGGCTGCGTTCTTCATCGATG8331.0172927556054907No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCGGC7340.8963900151433736No Hit
GCTGCGTTCTTCATCGAAGAGGAACTCTGCCAAGGCCTTGGCAAGTTCGG7190.8780714181036589No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA6280.7669385960627229No Hit
GCTGCGTTCTTCATCGATGCCGATATGTTTCTCAAAATCACCCTGACCAT5860.7156465243515217No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT5350.6533632944164917No Hit
GCTGCGTTCTTCATCGATGCGTCCGTACCTTGGCTGCGTTCTTCATCTGC4160.5080357579014215No Hit
GCTGCGTTCTTCATCGATGTCCGTACCTTGGCTGCGTTCTTCATCGATGT3690.4506374871769821No Hit
GCTGCGTTCTTCATCGATGCGTGAGCCGAGATATCCGTTGCCGAGAGTCG3320.4054516144790191No Hit
GCTGCGTTCTTCATCGATGCCGCAATGGTAGGGCATTTAGGCTCAGCAGC3310.40423037467637146No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG3190.3895754970445997No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT3180.38835425724195205No Hit
GCTGCGTTCTTCATCGATTTCGCCCAACAATGCTTCAGGAGAAACGACAA3010.367593180596942No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG2520.3077524302672073No Hit
GCTGCGTTCTTCATCGATGCAGCCCTTATCTGCAGCAGCTGGAATCTCTG2350.28699135362219724No Hit
GCTGCGTTCTTCATCGGCGCCATGTGCCAAGGCATCCGCCTCGTGCTCTT2290.27966391480631136No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGATTCG2120.25890283816130133No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG2100.256460358556006No Hit
GCTGCGTTCTTCATCGGTCCGTACCTTGGCTGCGTTCTTCATCGGTCCGT1990.24302672072688192No Hit
GCTGCGTTCTTCATCGATGCCTTGCAATGGGTCTTCATAGTGCCTATCCA1670.20394704704215721No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1600.19539836842362365No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGTTTTTTTCTTTACGCT1530.18684968980509012No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT1390.16975233256802308No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT1290.15753993454154658No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCTAGGCCGGACGATCGGGCAAACT1270.1550974549362513No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTAG1210.1477700161203654No Hit
GCTGCGTTCTTCATCGATGCACTGATCTCGCAGATGAGCGAGCACCCCAT1190.1453275365150701No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG1180.14410629671242245No Hit
GCTGCGTTCTTCATCGATGCGAGATCCGAGATATCCGTTGCCGAGAGTCG1140.13922133750183188No Hit
GCTGCGTTCTTCATCGATGCCTATCACACCATTTAAGATGTTTTCCTGTG1130.13800009769918423No Hit
GCTGCGTTCTTCATCGATGCTGCACAGAGCCTGCATCCTCCTCCTCCTCG1120.13677885789653657No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC1010.12334522006741244No Hit
GCTGCGTTCTTCATCGATGCCTTCCTTAACGTGGACAAAGGATTGGTCAA1000.12212398026476479No Hit
GCTGCGTTCTTCATCGATGCGAGAGACGAGATATCCGTTGCCGAGAGTCG980.1196815006594695No Hit
GCTGCGTTCTTCATCGATGCCATGAACCGTTTGCGCTTCGATAGCAGGCT970.11846026085682185No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCT970.11846026085682185No Hit
GCTGCGTTCTTCATCGATGCCTGCACTTGTTGGATCAAGAAGCTCATGTA970.11846026085682185No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG940.1147965414488789No Hit
GCTGCGTTCTTCATCGATGCCGTACCTTGGCTGCGTTCTTCATCGATGCC940.1147965414488789No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT910.11113282204093596No Hit
GCTGCGTTCTTCATCGATGCTAGAGCCGAGATATCCGTTGCCGAGAGTCG900.1099115822382883No Hit
GCTGCGTTCTTCATCGATGGTCCGTACCTTGGCTGCGTTCTTCATCGGCT830.10136290361975478No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG820.10014166381710712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)