FastQCFastQC Report
Sun 21 May 2023
EGAF00007832676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82929
Sequences flagged as poor quality0
Sequence length235-238
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT2802133.78914493120621No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA1821021.958542849907754No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT49505.9689614007162755No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT39324.741405298508362No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG19562.3586441413739463No Hit
GCTGCGTTCTTCATCGATGCCGATTTGTTTCTCAAAATCACCCTGACCAT12671.5278129484257619No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTCCACTTCGCAAATCAAAATAA11881.432550736171906No Hit
GCTGCGTTCTTCATCGATGCGTAGACAGACGAAGCACAGCCAAGTAGCAG9981.2034390864474431No Hit
GCTGCGTTCTTCATCGATGCATTCAATATTGCTATTTACTTTGCAAATTA9711.1708811151708087No Hit
GCTGCGTTCTTCATCGACGACAGTCTCGACTATCTCGAGCGAATCGACGA8100.9767391382990268No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT7820.9429753162343691No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG7550.910417344957735No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTTGCAAATTA6180.7452157869985168No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGTTATTTACTTCGCAAATCA5970.7198929204500235No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT5560.6704530381410604No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG5480.6608062318368725No Hit
GCTGCGTTCTTCATCGATGCCAAGGAGCGGATTAAACCCTTCAGTAAGAC5300.6391009176524497No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT5060.6101604987398859No Hit
GCTGCGTTCTTCATCGATTTCGCCCAACAATGCTTCAGGAGAAACGACAA4960.598101990859651No Hit
GCTGCGTTCTTCATCGATGCCGGTCGCTTTGGAAACCGCCGTGCGGACAT4340.5233392420021947No Hit
GCTGCGTTCTTCATCGATTTCACCCAACAATGCTTCAGGAGAAACGACAA3850.4642525533890436No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG3520.4244594773842684No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG3350.4039600139878691No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG2950.35572598246692955No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT2850.34366747458669467No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT2550.3074919509459899No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGCTGAAGGTTT2080.2508169639088859No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT2060.24840526233283894No Hit
GCTGCGTTCTTCATCGATACCGGTCGCTTTGGAAACCGCCGTGCGGACAT2000.241170157604698No Hit
GCTGCGTTCTTCATCGATGCTCCATGTTATATGGATTTCATAACTAATAC1870.2254940973603926No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCAAGGCCGGAGGATCGGGCAAACT1800.2170531418442282No Hit
GCTGCGTTCTTCATCGATGCGTGGTTTTCGCAAATTAAAGCAGCCTGATT1770.2134355894801577No Hit
GCTGCGTTCTTCATCGAGGTCGATGAAGGAGTCATAGCGCTCGGAGCGCA1770.2134355894801577No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG1760.2122297386921342No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT1760.2122297386921342No Hit
GCTGCGTTCTTCATCGATGCGTTTTGACTTCGCAAATAAAAATAAACTAC1740.20981803711608726No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT1740.20981803711608726No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCACCGTTTGTAGTTG1700.20499463396399328No Hit
GCTGCGTTCTTCATCGATGCTTCTTGAATAGTAACCTTTTCTAAGCACTA1500.1808776182035235No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT1470.17726006583945303No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT1430.17243666268735908No Hit
GCTGCGTTCTTCATCGATGCTACCCTTATCTGCAGCAGCTGGAATCTCTG1250.15073134850293626No Hit
GCTGCGTTCTTCATCGCTGTCAGATGCCTTGGCATCCTTCGTATGCCCTT1240.14952549771491275No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT1210.14590794535084228No Hit
GCTGCGTTCTTCATCGATCGTCTTCCTTATTCTCAGACAAAATAAACTTC1170.14108454219874833No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTCCACTTCGCAAATCAAAATAA1160.13987869141072484No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTA1140.13746698983467784No Hit
GCTGCGTTCTTCATCGATGCCTGGGTTCCCGTCAACACCAGGAACATCGC1140.13746698983467784No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG970.11696752643827853No Hit
GCTGCGTTCTTCATCGATACGAGAGCCAAGAGATCCACCGTTTGTAGTTG930.11214412328618456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)