FastQCFastQC Report
Sun 21 May 2023
EGAF00007832684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78358
Sequences flagged as poor quality0
Sequence length236-238
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG4452256.81870389749611No Hit
GCTGCGTTCTTCATCGACACACGAGCCGAGTGATCCACCGCTTAGAGTTT1152214.704305878149007No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT27313.4852854845708157No Hit
GCTGCGTTCTTCATCGATGCTGTGGTGGTGACGGTGGCTGCTGCGCTGGG25703.279818269991577No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT22152.826769442813752No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT19222.452844636157125No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG16462.1006151254498584No Hit
GCTGCGTTCTTCATCGATGCGTCGGACAGTCACAATCAACTCACATGCGG6400.8167640827994588No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG5210.6648970111539345No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG5000.6380969396870773No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT4380.5589729191658798No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG4320.5513157558896348No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG3710.47346792924781134No Hit
GCTGCGTTCTTCATCGATGCCGAAACCGAGCCCTTCGTGTATCAGCAGGT3270.4173153985553485No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA2650.33819137803415095No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT2170.27693407182419155No Hit
GCTGCGTTCTTCATCGATACACGAGCCGAGTGATCCACCGCTTAGAGTTT1710.2182291533729804No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT1680.21440057173485794No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTTCCGAGAGTCG1670.2131243778554838No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGACGAGAGTCG1510.19270527578549732No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA1410.1799433369917558No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT1220.15569565328364685No Hit
GCTGCGTTCTTCATCGATGCGATAGCCGAGATATCCGTTGCCGAGAGTCG1140.1454861022486536No Hit
GCTGCGTTCTTCATCGATTCGAAACGCCTAGGCATCCGCCGTATGCCCTT1130.14420990836927944No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTTAGAGTTT1080.1378289389724087No Hit
GCTGCGTTCTTCATCGATGCCTTCCTGAACGTGGACAAAGGATTGGTCAA1080.1378289389724087No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG980.12506700017866715No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG950.12123841854054468No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCATTGCTGAGAGTCA920.11740983690242221No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCATTGCCGAGAGTCG900.1148574491436739No Hit
GCTGCGTTCTTCATCGATGCGAGAGACGAGATATCCGTTGCCGAGAGTCG860.10975267362617729No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGTCGAGAGTCG860.10975267362617729No Hit
GCTGCGTTCTTCATCGATGGGAGAGCCAAGAGATCCGTTGCTGAAAGTTG840.10720028586742897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)