FastQCFastQC Report
Sun 21 May 2023
EGAF00007832697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88398
Sequences flagged as poor quality0
Sequence length247-250
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA5653963.95959184596936No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC1068012.081721305911898No Hit
GGAAGTAAAAGTCGTAACAAGGCATGTTGAAAATGCCATCGTTGCCATTG68057.698137966922329No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC11601.3122468834136518No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC5600.6334984954410734No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG5200.588248602909568No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC4700.5316862372451866No Hit
GGAAGTAAAAGTCGTAACAAGGCCGGCAATCCTATTATATCATGGGGAAA4620.5226362587388854No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC4610.5215050114255979No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG4490.5079300436661464No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACATCTCCGGCA3970.4491051833751895No Hit
GGAAGTAAAAGTCGTAACAAGGTGAGTAGGATGCACGAACAAAGTGTGTT3650.41290526934998534No Hit
GGAAGTAAAAGTCGTAACAAGGGCGCAATAGGAAAAGAAGGAAACCATGG3530.39933030159053373No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACAACTCTCCGGCA3130.3540804090590285No Hit
GGAAGTAAAAGTCGTAACAAGGCTGAGTTGCACAAACTCTTTTTTGATTT2860.3235367316002625No Hit
GGAAGTAAAAGTCGTAACAAGTCAAGACCGGGACAAAGAAAAAAACGAAT2740.30996176384081087No Hit
GGAAGTAAAAGTCGTAACAAGGGCTGGCAGGGGCTGTGGGAGGAGTTTGT2480.28054933369533247No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGAA2350.2658431186225933No Hit
GGAAGTAAAAGTCGTAACAAGGGTGGAGCTTCAGCTTTTCGCAAGCGCTG2130.24095567773026538No Hit
GGAAGTAAAAGTCGTAACAAGGCGGAGTTGCACAAACTCTTTTTTAACTT1940.21946197877780038No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGAAACCTCTCCGGCA1870.211543247584787No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTATCCGGCA1800.20362451639177356No Hit
GGAAGTAAAAGTCGTAACAAGGCTACGGAAAAGAAAGTTTTGGTGGGCAA1660.18778705400574672No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACTTCTCCGGCA1530.17308083893300752No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACATCTCTCCGGCA1420.1606371184868436No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCAGGCA1340.15158713998054255No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGACA1290.1459309034141044No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTACGGCA1260.1425371614742415No Hit
GGAAGTAAAAGTCGTAACAAGGCGAAAGACGGCACGACGGGTGCGATGAT1200.13574967759451573No Hit
GGAAGTAAAAGTCGTAACAAGGGTTAGTAGATGTTTTAAAATTTTCATTT1110.12556845177492704No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC1030.11651847326862598No Hit
GGAAGTAAAAGTCGTAACAAGGCATCGAAGGTTTGGTACACGTTTCCGAA1010.11425597864205073No Hit
GGAAGTAAAAGTCGTAACAAGGATGCGACTGAATAACGTGGTCGATTAAC980.11086223670218782No Hit
GGAAGTAAAAGTCGTAACAAGGTATCAGTAGGTGAACCTGCTGATGGATC940.10633724744903732No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC900.10181225819588678No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACGGGAACGTGCGGCTGGATC890.10068101088259915No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGAAGATGAAGGACACCTCTCCGGCA890.10068101088259915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)