FastQCFastQC Report
Sun 21 May 2023
EGAF00007832802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457900
Sequences flagged as poor quality0
Sequence length235-238
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG37061480.93775933609959No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT186234.067045206376938No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT93992.0526315789473686No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT87381.9082769163572832No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG80271.7530028390478272No Hit
GCTGCGTTCTTCATCGATGCAGTAAGACCGTAGCTGCGTTCTTCATCGAT51781.130814588338065No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG18250.39855863725704305No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT14930.3260537235204193No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT10220.2231928368639441No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG8720.19043459270583096No Hit
GCTGCGTTCTTCATCGATGCAGTAAGACCGTAGCTGCGTTCTTCATCGGC8140.17776807163136057No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG8020.1751474120987115No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT7380.16117056125791657No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG6820.148940816772221No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT5540.12098711509063115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)