FastQCFastQC Report
Sun 21 May 2023
EGAF00007832812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108346
Sequences flagged as poor quality0
Sequence length235-238
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT4251139.23633544385579No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC1842917.009395824488212No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT99779.208461779853433No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG74236.851198936739704No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG64905.9900688534879No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG41543.8340132538349363No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT19271.7785612759123548No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT15081.3918372621047386No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT14861.371531943957322No Hit
GCTGCGTTCTTCATCGATGCCACCACCTCAATGCCATCTCGCTGATCTGG13191.2173961198382959No Hit
GCTGCGTTCTTCATCGATGCTTCTTGAATAGTAACCTTTTCTAAGCACTA9750.8998947815332361No Hit
GCTGCGTTCTTCATCGATGCATATGTGGTGTGGCCCACATTTCTGTATGC9450.8722057113322135No Hit
GCTGCGTTCTTCATCGATGCACACAGGAGCTCAGAATATACCTAGTGAAG6600.6091595444224983No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG4590.4236427740756466No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT3800.3507282225462869No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA3670.3387296254591771No Hit
GCTGCGTTCTTCATCGATCTGAAAGAGCTCGGGATGCGCCCAGGCATCCG3620.3341147804256733No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG3610.3331918114189725No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT3400.3138094622782567No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT3390.31288649327155593No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT2840.2621231979030144No Hit
GCTGCGTTCTTCATCGATGCTGGGGCTGGCATTGATAGATTTGGCTACAG2170.20028427445406383No Hit
GCTGCGTTCTTCATCGACGCACGAGCCGAGTGATCCACCGCTAAGAGTCG2170.20028427445406383No Hit
GCTGCGTTCTTCATCGATGCACACATGGGGGCCACGTCAGGTGACCACTC1570.14490613405201855No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT1560.14398316504531777No Hit
GCTGCGTTCTTCATCGACGAACGAGCGAGCGAACGAACGGGCACGCGGGC1560.14398316504531777No Hit
GCTGCGTTCTTCATCGTTACGGGAGCCAAGATATCCGTTGTTGAGAGTTG1380.1273697229247042No Hit
GCTGCGTTCTTCATCGATGCACATGACTAAGCCTTGCTGTGGGAAAGGAT1340.12367784689790116No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTTGCAAATTA1310.12090893987779891No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG1160.10706440477728758No Hit
GCTGCGTTCTTCATCGATGCCCCTTCTCACTACTTTTGTGAAAAAAATCA1150.10614143577058682No Hit
GCTGCGTTCTTCATCGATGCCTAGCAGGCACTTAAATATATATGCCTGTA1090.1006036217303823No Hit
GCTGCGTTCTTCATCGATGCACACAGTGGTGCCCGCCTGCTCGTTCCTCT1090.1006036217303823No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)