FastQCFastQC Report
Sun 21 May 2023
EGAF00007832829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76398
Sequences flagged as poor quality0
Sequence length247-250
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC4299556.27765124741485No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC62978.24236236550695No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG60217.8810963637791565No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG47176.174245399094217No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA33444.377077933977329No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC30273.962145605905914No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC8461.1073588313830205No Hit
GGAAGTAAAAGTCGTAACAACAGGAGAGCGTCAGCCAATCGCCGCAATCG5790.757873242755046No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC5420.7094426555668997No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC4320.5654598287913296No Hit
GGAAGTAAAAGTCGTAACAAGGTATCAGTAGGTGAACCTGCTGATGGATC2870.37566428440535093No Hit
GGAAGTAAAAGTCGTAACAAGGGCTGGCAGGGGCTGTGGGAGGAGTTTGT2600.34032304510589284No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC2230.29189245791774654No Hit
GGAAGTAAAAGTCGTAACAAGGAGCTGTTGAAAAAGCTGGTAATTGTCAT2160.2827299143956648No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC1970.25786015340715723No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGAAAACAGAATCCGAAAAGAGCACA1960.25655121861828845No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGGACCAGCGGAGGGATC1910.25000654467394434No Hit
GGAAGTAAAAGTCGTAACAAGGTCAGTCGCACCGTAACTTCCAACAATCA1910.25000654467394434No Hit
GGAAGTAAAAGTCGTAACAAGGATGTGCATGTACCCATCGTAAAGCGAAG1910.25000654467394434No Hit
GGAAGTAAAAGTCGTAACAAGGAAGAAGTGAAATTCCTGAATAGACCAAT1860.24346187072960024No Hit
GGAAGTAAAAGTCGTAACAAGGAAAAGTGGGATAGTTTCTTCTTTGGAGA1560.2041938270635357No Hit
GGAAGTAAAAGTCGTAACAAGGAGTGAGAAAGACAGCCTAATGTTTCCTG1250.16361684860860232No Hit
GGAAGTAAAAGTCGTAACAAGTCCTTAATCGGCGGCAGCGCCGCAATGGA1190.1557632398753894No Hit
GGAAGTAAAAGTCGTAACAAGGATTCCGTAGGTGAACCTGCGGAAGGATC1120.1466006963533077No Hit
GGAAGTAAAAGTCGTAACAAGGTAAGAAAAATAAATAAAATTTAAAAACC1100.14398282677557003No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGACAAGCTGATGATTGTGGGAGCAT1000.13089347888688185No Hit
GGAAGTAAAAGTCGTAACAACACTAAATCTTATCTCCAGCCCTCAGAAGG960.1256577397314066No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATC960.1256577397314066No Hit
GGAAGTAAAAGTCGTAACAAGGGTTAGTAGATGTTTTAAAATTTTCATTT900.11780413099819367No Hit
GGAAGTAAAAGTCGTAACAAGGAAGATATGAAAAGGGGCCAAAACCAAGG890.11649519620932486No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC880.11518626142045603No Hit
GGAAGTAAAAGTCGTAACAAGGAACTGTTGAAAAAGCTGGTAATTGTCAT840.10995052226498077No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT820.10733265268724312No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGCGAACCTGCGGAGGGATC810.10602371789837431No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)