FastQCFastQC Report
Sun 21 May 2023
EGAF00007832896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72290
Sequences flagged as poor quality0
Sequence length235-238
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT4935368.27085350670909No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG44766.191727763176096No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT26343.6436574906626085No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG20992.903582791534099No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT16582.293539908701065No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG12371.7111633697606863No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCATTGTTAAAAGTTT6750.9337391063770923No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT6260.8659565638400886No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA5230.7234748927929174No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT4910.67920874256467No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT4470.61834278600083No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT3920.5422603402960299No Hit
GCTGCGTTCTTCATCGATACGAGAACCAAGAGATCCATTGTTAAAAGTTT3030.41914510997371696No Hit
GCTGCGTTCTTCATCGATTTCACCCAACAATGCTTCAGGAGAAACGACAA2550.352745884631346No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT2490.3444459814635496No Hit
TCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT2430.3361460782957532No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACATGTGT2410.33337944390648777No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG2330.32231290634942594No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT2030.28081339051044407No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG2020.2794300733158113No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG1770.24484714344999306No Hit
GCTGCGTTCTTCATCGATGCCATATATTTGCTTATCACAGCCAGCACTGG1400.19366440724858208No Hit
GCTGCGTTCTTCATCGATTCGAGAACCAAGAGATCCGTTGTTGAAAGTTT1350.18674782127541845No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG1280.17706460091298934No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCAAGAGTCG1260.1742979665237239No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT1190.1646147461612948No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT1030.1424816710471711No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA930.1286484991008438No Hit
GCTGCGTTCTTCATCGATGCGAGAAACAAGAGATCCGTTGTTGAAAGTTT900.12449854751694564No Hit
GCTGCGTTCTTCATCGATGCGACGTAACACAAGGTCGATACCTTTTTCTC860.11896527873841473No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTTTTGAAAGTTT770.10651542398672016No Hit
GCTGCGTTCTTCATCGATGCCTGAGCCGAGACATTCGTCGCTGAAAGTTG730.10098215520818923No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)