FastQCFastQC Report
Sun 21 May 2023
EGAF00007832910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101090
Sequences flagged as poor quality0
Sequence length237-238
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG4312942.663962805420915No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG2307222.823226827579386No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT76987.614996537738648No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA43274.28034424770007No Hit
GCTGCGTTCTTCATCGATGGGAGAACCTAGAGATCCGTTGTCGAAAGTTG28402.8093777821743No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG23182.2930062320704323No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT21632.1396775150855674No Hit
GCTGCGTTCTTCATCGATGCCAGTGAGATACGGCTGCGTTCTTCATCGAT10801.0683549312493819No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA9960.9852606588188743No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTCCACTTCGCAAATCAAAATAA9020.8922742110990207No Hit
GCTGCGTTCTTCATCGATGCAGTGAGATACGGCTGCGTTCTTCATCGATG6490.6420021762785636No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT5280.5223068552774754No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT4450.4402018003759027No Hit
GCTGCGTTCTTCATCGATTTCCAGGATCATTACTTCAACTTCGTCGCCCA4250.4204174497972104No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG3700.36601048570580674No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT3610.3571075279453952No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT2890.28588386586210307No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC2850.28192699574636465No Hit
GCTGCGTTCTTCATCGATGCCGATATGTTTCTCAAAATCACCCTGACCAT2820.2789593431595608No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT2270.22455237906815706No Hit
GCTGCGTTCTTCATCGATGCCAGTGAGATACGGCTGCGTTCTTCATCGGC2170.21466020377881095No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACATGTGT2030.20081115837372637No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG1760.17410228509249184No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1690.16717776238994955No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT1230.12167375605895737No Hit
GCTGCGTTCTTCATCGATGCAGTGAGATACGGCTGCGTTCTTCATCGGCT1190.11771688594321891No Hit
GCTGCGTTCTTCATCGATGCCCTTGCCGAGCACCACGGCGTCTCGTACTG1120.11079236324067664No Hit
GCTGCGTTCTTCATCGATGCGAATAACTACGACGAAGAGGGCAAGGTTAC1110.109803145711742No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1080.10683549312493817No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTTGCAAATTA1020.10090018795133049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)