FastQCFastQC Report
Sun 21 May 2023
EGAF00007832948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190033
Sequences flagged as poor quality0
Sequence length235-238
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT6535934.39350007630254No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG5877830.930417348565776No Hit
GCTGCGTTCTTCATCGATGCAGGCAAGCACTGGCTGCGTTCTTCATCGAT2281712.006861966079576No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT53872.8347708029658008No Hit
GCTGCGTTCTTCATCGATGCAGGCAAGCACTGGCTGCGTTCTTCATCGGC53602.820562744365452No Hit
GCTGCGTTCTTCATCGATGAGGCAAGCACTGGCTGCGTTCTTCATCGATG51352.702162256029216No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG13040.6861966079575652No Hit
GCTGCGTTCTTCATCGATGAGGCAAGCACTGGCTGCGTTCTTCATCGGCT12300.6472560029047587No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG9340.4914935826935322No Hit
GCTGCGTTCTTCATCGATGCGGCAAGCACTGGCTGCGTTCTTCATCGATG7980.4199270652991849No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT7290.3836175822094057No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT6150.32362800145237935No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT5890.3099461672446365No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACATGCGTGT5470.28784474275520566No Hit
GCTGCGTTCTTCATCGATGCCCGCATGCCTGTTCGTCGCTACGAGGTGCT5350.2815300500439398No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG5260.2767940305104903No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG4880.25679750359148146No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT4730.24890413770239905No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG3750.19733414722706055No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGTCAAACT3630.1910194545157946No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT3620.1904932301231891No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT3580.18838833255276716No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA3330.17523272273762977No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGACGAGAGTCG2790.14681660553693304No Hit
GCTGCGTTCTTCATCGATGCAGGCAAGCACTGGCTGCGTTCTTCATCGCC2780.14629038114432757No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT2730.1436592591813001No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG2690.14155436161087812No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG2240.11787426394363083No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGATGCCGGACGATCGGGCAAACT2130.11208579562497041No Hit
GCTGCGTTCTTCATCGATGCCTTTTCCGAGGCCGGACGATCGGGCAAACT2110.11103334683975942No Hit
GCTGCGTTCTTCATCGATGCACAGAACATTTACCACAAAATGGAACGCCG2070.10892844926933742No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCTGTTGCCGAGAGTCG1970.10366620534328248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)