FastQCFastQC Report
Sun 21 May 2023
EGAF00007832986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007832986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86844
Sequences flagged as poor quality0
Sequence length235-238
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG1497817.24701764082723No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG1381715.91013771820736No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1124812.951959836027822No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT930910.719220671548985No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT65517.543411174059232No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT53996.21689466169223No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG44375.109161254663534No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG33103.8114319929989406No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT22362.5747317028234535No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTGGCCTAAAATTTTCTT8410.968403113629036No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA7480.8613145410160749No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT7390.8509511307632075No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTA4780.5504122334300585No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTA4480.5158675325871678No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG4090.4709594214914099No Hit
GCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGTTT3710.42720280042374836No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG3520.4053244898899176No Hit
GCTGCGTTCTTCATCGATGCGAGAGCAGAGATATCCGTTGCCGAGAGTCG3000.34544700842890697No Hit
GCTGCGTTCTTCATCGATGCATATGTGGTGTGGCCCACATTTCTGTATGC2940.33853806826032884No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTT2920.33623508820413617No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT2840.3270231679793653No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGTTT2710.31205379761411267No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA2620.3016903873612454No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC2440.280963566855511No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACATGTGT2330.2682971765464511No Hit
GCTGCGTTCTTCATCGATGCGAGAGACAAGAGATCCGTTGTTGAAAGTTG2020.23260098567546403No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTG1950.22454055547878957No Hit
GCTGCGTTCTTCATCGATGCGAGATCCGAGATATCCGTTGCCGAGAGTCG1670.19229883469209155No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT1660.19114734466399522No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTTT1660.19114734466399522No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCTGTTGCTGAAAGTTG1600.18423840449541706No Hit
GCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGTTT1600.18423840449541706No Hit
GCTGCGTTCTTCATCGATGGGAGAGCCAAGAGATCCGTTGCTGAAAGTTG1570.180783934411128No Hit
GCTGCGTTCTTCATCGATGCCACCACCTCAATGCCATCTCGCTGATCTGG1480.17042052415826078No Hit
GCTGCGTTCTTCATCGATGCTTCTTGAATAGTAACCTTTTCTAAGCACTA1410.1623600939615863No Hit
GCTGCGTTCTTCATCGATGTGGCCCAAAGTGGCCCAAAGCGTCCCAAAGT1310.1508451936806227No Hit
GCTGCGTTCTTCATCGATGCTCATTATCTTTTTTTTTTGGTAATAGTTAT1300.14969370365252638No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACTTA1290.14854221362443001No Hit
GCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGTTT1230.1416332734558519No Hit
GCTGCGTTCTTCATCGATGGGAGACCCAAGAGATCCGTTGTTGAAAGTTG1230.1416332734558519No Hit
GCTGCGTTCTTCATCGAAACGGATATAGCTTCCGTCTTTTCTTCTTGTTT1110.12781539311869558No Hit
GCTGCGTTCTTCATCGATGCCCTATGGCAAGATTTCTGAAATTGCCTTCA1110.12781539311869558No Hit
GCTGCGTTCTTCATCGATGCCTATCACACCATTTAAGATGTTTTCCTGTG1100.12666390309059924No Hit
GCTGCGTTCTTCATCGATGCACACAGGAGCTCAGAATATACCTAGTGAAG1090.12551241306250288No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT1040.11975496292202109No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG1030.11860347289392474No Hit
GCTGCGTTCTTCATCGATGGGAGAGCCAAGAGATCCATTGCTGAAAGTTG990.11399751278153931No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCGAAAGTTG930.10708857261296116No Hit
GCTGCGTTCTTCATCGATGCGCCAGACAAGGATGCCATTGAGAAGAATAT870.10017963244438305No Hit
GCTGCGTTCTTCATCGATGCAGAGCTCCCTGGTCCTTGCAGTTGCTCTGC870.10017963244438305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)