FastQCFastQC Report
Sun 21 May 2023
EGAF00007833090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92794
Sequences flagged as poor quality0
Sequence length235-238
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG6709472.30424380886696No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT84139.06631894303511No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT22022.3729982541974697No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT14941.6100178890876566No Hit
GCTGCGTTCTTCATCGATGCCGTTGTCGACCGCTTCGCGGATCAGGTGGT5920.6379722826906912No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG5300.5711576179494364No Hit
GCTGCGTTCTTCATCGATGCCGAAGATCATGACCTCGGGCTAAGACGCCT5230.5636140267689721No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG4650.5011099855594112No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT4080.43968360023277364No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG2990.322219108994116No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT2610.28126818544302434No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA2150.23169601482854493No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA2120.22846304717977456No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA1930.2079875854042287No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG1930.2079875854042287No Hit
TCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1790.1929004030433002No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGTTTTTTTCTTTACGCT1550.16703666185313706No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCTGTTGCCGAGAGTCG1480.1594930706726728No Hit
GCTGCGTTCTTCATCGATGCGCGGGTTACCTTGTTACGACTTGCTGAGAC1480.1594930706726728No Hit
GCTGCGTTCTTCATCGATGCGGAGCTTGACGTCGCGTGGGCAGATCATCC1470.15841541478974935No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCATTGCCGAGAGTCG1430.15410479125805548No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG1420.15302713537513202No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA1400.15087182360928508No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCT1360.1465612000775912No Hit
GCTGCGTTCTTCATCGATGCGCGTGCTGCGTCTAAGGGTTCGATGCGCGT1240.13362932948250966No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG1230.13255167359958617No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG1110.1196198030045046No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG1110.1196198030045046No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCTTTGCCGAGAGTCG1110.1196198030045046No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGATAGTCG1100.11854214712158115No Hit
GCTGCGTTCTTCATCGATGCGAGAGACGAGATATCCGTTGCCGAGAGTCG1090.11746449123865768No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGATTCG1090.11746449123865768No Hit
GCTGCGTTCTTCATCGATGCAGTCCAGAAGTAAGCCGAGGTGGCCGGCAT1080.1163868353557342No Hit
GCTGCGTTCTTCATCGATGCTGAGACGACGCGCGAGGGTTCGATGCTGAG1050.11315386770696381No Hit
GCTGCGTTCTTCATCGATGCAGAGCATACCGTTGTCACCGTTCCTCCGGC1040.11207621182404036No Hit
GCTGCGTTCTTCATCGATGTGAGAGCCGAGATATCCGTTGCCGAGAGTCG1040.11207621182404036No Hit
GCTGCGTTCTTCATCGATGCGAGATCCGAGATATCCGTTGCCGAGAGTCG1000.10776558829234649No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCTGAGAGTCG980.10561027652649957No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAATCCGGACGATCGGGCAAACT980.10561027652649957No Hit
GCTGCGTTCTTCATCGATGCGAGAGCTGAGATATCCGTTGCCGAGAGTCG960.10345496476065262No Hit
GCTGCGTTCTTCATCGATGCCCACCTTGGGGTCTAGGCCAACGCGAGCCA930.10022199711188222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)