FastQCFastQC Report
Sun 21 May 2023
EGAF00007833170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88708
Sequences flagged as poor quality0
Sequence length236-238
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT6290570.91243179871037No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG32083.6163592911575053No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT25112.830635342922848No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT24052.711142174324751No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT20832.3481534923569463No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG19442.1914596203273664No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT15001.6909410650674122No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG11151.2569328583667765No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT7770.8759074717049194No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT7110.8015060648419534No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT7010.7902331244081706No Hit
GCTGCGTTCTTCATCGATGCGGATGTAGGAGCCGTCGGGACGACGAACTT6540.7372503043693918No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT3900.4396446769175271No Hit
GCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTGAAAGTTT3160.35622491770753484No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG2770.3122604500157821No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG2660.2998602155386211No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC2310.2604049240203815No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT2140.24124092528295082No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG1750.1972764575911981No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG1640.18487622311403706No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGACAAACT1560.17585787076701087No Hit
GCTGCGTTCTTCATCGATGTCGTTTCCGAGGCCGGACGATCGGGCAAACT1520.17134869459349777No Hit
GCTGCGTTCTTCATCGATGCAGGTGAAGAGGTCTATGGCGGACAGGTCGT1500.16909410650674123No Hit
GCTGCGTTCTTCATCGACTCTTGGTGCCAAGGCATCCGCCTTACGCCCTT1470.1657122243766064No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA1440.16233034224647158No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCAAAAGTTG1430.16120304820309328No Hit
GCTGCGTTCTTCATCGATTCCGTTTCCGAGGCCGGACGATCGGGCAAACT1350.15218469585606711No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTA1300.14654822563917572No Hit
GCTGCGTTCTTCATCGATGCTAGTGCCAAGAGATCCATTGTCAAAAGTTG1160.13076610903187988No Hit
GCTGCGTTCTTCATCGATGCCTATCAAGGACGCTGCGTTCTTCATCGATG1150.1296388149885016No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG1070.12062046264147541No Hit
GCTGCGTTCTTCATCGATGCAAGGGATGAAGCTCTCTTTTTGTCTCTTTC1070.12062046264147541No Hit
GCTGCGTTCTTCATCGAGGTCGATGAAGGAGTCATAGCGCTCGGAGCGCA940.10596564007755782No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTG910.102583757947423No Hit
GCTGCGTTCTTCATCGATGCGGGAGCCAAGACATCCATTGTTGAGAGTTG890.10032916986066646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)