FastQCFastQC Report
Sun 21 May 2023
EGAF00007833192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86106
Sequences flagged as poor quality0
Sequence length235-238
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT3478540.39788168071911No Hit
GCTGCGTTCTTCATCGATGCTCCATGTTATATGGATTTCATAACTAATAC1975122.938006642974937No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA979411.374352542215409No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG30063.4910459201449378No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACATGCGTGT23472.725710171184354No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT16621.9301790815971012No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT13551.5736417903514273No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT12291.4273105242375677No Hit
GCTGCGTTCTTCATCGATGCCGCCAGGCAGACCTACGAATACGCCGAAGT8951.0394165331103524No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT5720.664297493786728No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA4360.5063526351241493No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG4000.4645437019487608No Hit
GCTGCGTTCTTCATCGATGCAGACAACGATCAAATCCAAGCCGCCCATGA3860.4482846723805542No Hit
GCTGCGTTCTTCATCGATGCTTTTCAGTGCGTGCCCTTCGCACATCTGCG2550.296146609992335No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGTTTTTTTCTTTACGCT2430.2822102989338722No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACATGTGT2240.26014447309130606No Hit
GCTGCGTTCTTCATCGACGACAGTCTCGACTATCTCGAGCGAATCGACGA2240.26014447309130606No Hit
GCTGCGTTCTTCATCGATGCCAATACGGTAGCGACGACGCTGCACATTTG2110.24504680277797133No Hit
GCTGCGTTCTTCATCGATTTCACCCAACAATGCTTCAGGAGAAACGACAA2060.23924000650361182No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC1900.2206582584256614No Hit
GCTGCGTTCTTCATCGATGCGACTATGGTAAGACGCAGAAACAGTTTGGC1840.21369010289642998No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1520.1765266067405291No Hit
GCTGCGTTCTTCATCGATGCCCGGCTTCCTTTTTCTCTTTATCGAAAAAA1500.1742038882307853No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT1230.14284718834924395No Hit
GCTGCGTTCTTCATCGATGCAGAATGCATAATTATCATTTCCATGCTCAT1230.14284718834924395No Hit
GCTGCGTTCTTCATCGCTGTCAGATGCCTTGGCATCCTTCGTATGCCCTT1220.14168582909437205No Hit
GCTGCGTTCTTCATCGATGCCAGTTGGCGGGTGAACACTGTAATGTCTTC1150.13355631431026874No Hit
TCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT1120.13007223654565303No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGTCAAACT1090.12658815878103732No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCTGACGATCGGGCAAACT1050.12194272176154972No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGACAAACT1000.1161359254871902No Hit
GCTGCGTTCTTCATCGATGTCGCTTCCGAAGCCGGACGATCGGGCAAACT950.1103291292128307No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCTAAGCCGGACGATCGGGCAAACT910.10568369219334309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)