FastQCFastQC Report
Sun 21 May 2023
EGAF00007833219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75612
Sequences flagged as poor quality0
Sequence length247-250
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA4513459.69158334655875No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC831310.994286621171243No Hit
GGAAGTAAAAGTCGTAACAAGGAGGGGATCGTCGGCGGGTGCGGCCTTTC22753.0087816748664236No Hit
GGAAGTAAAAGTCGTAACAAGGCATCGAAGGTTTGGTACACGTTTCCGAA22562.9836533883510556No Hit
GGAAGTAAAAGTCGTAACAAGGAGGATCTTAGCACATGCACATAGAAACA19512.580278262709623No Hit
GGAAGTAAAAGTCGTAACAAGGGCTGGCAGGGGCTGTGGGAGGAGTTTGT14871.9666190551764269No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT13721.8145267946886738No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC13531.789398508173306No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGAAAACAGAATCCGAAAAGAGCACA9121.2061577527376606No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC9001.1902872559911124No Hit
GGAAGTAAAAGTCGTAACAAGGAGGAAGTAGGCCAAGTTGAGCAGGATAT7931.0487753266677247No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG4640.6136592075331958No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG3920.5184362270539068No Hit
GGAAGTAAAAGTCGTAACAAGGGCGTGGGGCAGAAGGTGGAAAATGCGCG3450.4562767814632598No Hit
GGAAGTAAAAGTCGTAACAAGGAAGGAGCATATATGATTCAGCAGGAAAC2370.31344231074432627No Hit
GGAAGTAAAAGTCGTAACAAGGGGGCTGTTGCGGGCAGGTGTCGTTTTGT1890.2499603237581336No Hit
GGAAGTAAAAGTCGTAACAAGGGCTAGCGAATCTAATAATGAAGAATCAG1870.24731524096704227No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC1720.22747712003385706No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGCTGGATC1650.2182193302650373No Hit
GGAAGTAAAAGTCGTAACAAGGGATAACTCATGGCTCAAGCAGAGCAAAA1640.21689678886949162No Hit
GGAAGTAAAAGTCGTAACAAGGAGCTGAATGAGGCTTTTGCCGAGTTTAA1560.20631645770512616No Hit
GGAAGTAAAAGTCGTAACAAGGGCCAGCGAATCTAATAATGAAGAATCAG1440.19044596095857802No Hit
GGAAGTAAAAGTCGTAACAAGGAGGTGAGGTTGTTGGAGACAGTAGTCGT1380.18251071258530394No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC1300.17193038142093847No Hit
GGAAGTAAAAGTCGTAACAAGGTGAGTGATAAATTTTGCGGGATAAAACA1290.17060784002539278No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACAACTCTCCGGCA1290.17060784002539278No Hit
GGAAGTAAAAGTCGTAACAAGTCCGTAGTGGTGGCGCATGACGTGGAAGC1260.16664021583875577No Hit
GGAAGTAAAAGTCGTAACAAGGCGGCAGCCGCAGTGGAATCCGTCGTGCG1260.16664021583875577No Hit
GGAAGTAAAAGTCGTAACAAGGGCATAAATGTGAAGCGACGGGATTCGCT1220.16135005025657304No Hit
GGAAGTAAAAGTCGTAACAAGGTGGCGAGGAAACGAGCGATGCCTACCAA1220.16135005025657304No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC1200.15870496746548168No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC960.12696397397238532No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACATCTCCGGCA880.1163836428080199No Hit
GGAAGTAAAAGTCGTAACAAGGATTTGGCCAGCAGGGAAGGAAGGTTCAG840.11109347722583716No Hit
GGAAGTAAAAGTCGTAACAAGGGCGGCGAAGACGTCGAGAAGGAAGCGGC810.10712585303920012No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGAA800.10580331164365446No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)