FastQCFastQC Report
Sun 21 May 2023
EGAF00007833238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84394
Sequences flagged as poor quality0
Sequence length235-238
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC2323727.533947910988932No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT1465717.367348389695948No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1060612.567244116880346No Hit
GCTGCGTTCTTCATCGATGCCGATATGTTTCTCAAAATCACCCTGACCAT940111.139417494134655No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG67828.036116311586133No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA20592.439746901438491No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT15041.7821172121240847No Hit
GCTGCGTTCTTCATCGATGCCGATTTGTTTCTCAAAATCACCCTGACCAT12761.511955826243572No Hit
GCTGCGTTCTTCATCGACTCGAAACGCCAAGGCATCCACCGTATGCCCTT8871.051022584543925No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG8481.0048107685380476No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT8441.0000710951015477No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT4870.5770552408939024No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA4460.5284735881697751No Hit
GCTGCGTTCTTCATCGATGCATATGTGGTGTGGCCCACATTTCTGTATGC4270.505960139346399No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT3940.46685783349527216No Hit
GCTGCGTTCTTCATCGACGACAGTCTCGACTATCTCGAGCGAATCGACGA3920.46448799677702207No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT3530.4182761807711449No Hit
GCTGCGTTCTTCATCGATGCCTATCACACCATTTAAGATGTTTTCCTGTG3070.3637699362513923No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCGTGTTTAATGGGTG2780.32940730383676564No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT2640.3128184468090149No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT2390.28319548783088844No Hit
GCTGCGTTCTTCATCGATGCGATATCGACACGGCGCTGAAAGGCCTGCAC2200.26068203900751236No Hit
GCTGCGTTCTTCATCGATGCTGAATGTACCGTACTCACTCTGGATCGCCA2120.2512026921345119No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT2100.24883285541626182No Hit
GCTGCGTTCTTCATCGATGCTGTGGTGGTGACGGTGGCTGCTGCGCTGGG2090.24764793705713675No Hit
GCTGCGTTCTTCATCGATGCCCACCAAGCGTCCCGCGGGGGAGAGAAGCG2060.2440931819797616No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT1610.19077185581913406No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA1520.18010759058700856No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT1400.16588857027750786No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT1380.16351873355925775No Hit
GCTGCGTTCTTCATCGATGCCCAGACGAACTCCACATGCCTTGGTCCTCT1260.14929971324975708No Hit
GCTGCGTTCTTCATCGATGCGGCCGCGAGCTTATCGTCGATGCGATAGAG1170.13863544801763159No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTTT1070.12678626442638102No Hit
GCTGCGTTCTTCATCGATGCTGTCGACGGCGTACATCGGCGCTGCCATCA960.1137521624760054No Hit
TCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC900.10664265232125507No Hit
GCTGCGTTCTTCATCGATGCGCCTGACAAGGATGCCATTGAGAAGAATAT890.10545773396213001No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTTCCGAGAGTCG870.1030878972438799No Hit
GCTGCGTTCTTCATCGATGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA870.1030878972438799No Hit
GCTGCGTTCTTCATCGATGCCATGAACGAGATTTCGGGAGCAATTATCTC850.10071806052562979No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)