FastQCFastQC Report
Sun 21 May 2023
EGAF00007833317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107273
Sequences flagged as poor quality0
Sequence length247-250
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA4076037.99651356818584No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC3147829.34382370214313No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG58515.454308167013135No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC54985.12524120701388No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC34993.261771368377877No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC24752.3071975240740916No Hit
GGAAGTAAAAGTCGTAACAAGGAAGATATGAAAAGGGGCCAAAACCAAGG15521.4467759827729252No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC10370.9666924575615486No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC9330.8697435514994454No Hit
GGAAGTAAAAGTCGTAACAAGGTCGTCGTCTTCTGAGTATGCGTTTCCAA7650.7131337801683555No Hit
GGAAGTAAAAGTCGTAACAAGGATAACGTGGAATTTGGGACTCAGCCAAC5030.4688971129734416No Hit
GGAAGTAAAAGTCGTAACAACACTAAATCTTATCTCCAGCCCTCAGAAGG4920.45864290175533456No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC4760.4437276854380879No Hit
GGAAGTAAAAGTCGTAACAAGGCCTCACCTGACACCATGGAGTACTCTGC4160.3877956242484129No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG3840.35796519161391965No Hit
GGAAGTAAAAGTCGTAACAACAGGAGAGCGTCAGCCAATCGACGCAATCG3370.31415174368200754No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACAACTCTCCGGCA3020.28152470798803053No Hit
GGAAGTAAAAGTCGTAACAAGAGCAGAAGGAATTCAGAAGAGCCAGGGTG2690.25076207433370934No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGAAGGATC2630.24516886821474185No Hit
GGAAGTAAAAGTCGTAACAAGGGCCAGCCAGGGAGAGGTCTCCCCAGGCC2570.23957566209577433No Hit
GGAAGTAAAAGTCGTAACAAGGTTGACAGACAGATCGTGCCGAAGCTGGT2530.23584685801646266No Hit
GGAAGTAAAAGTCGTAACAAGGCATCGATGAAGAACGCAGCAGACCTTGG2510.23398245597680686No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT2430.2265248478181835No Hit
GGAAGTAAAAGTCGTAACAAGGATAGAGACTTGGTATGAGTGCTGGAAGG2430.2265248478181835No Hit
GGAAGTAAAAGTCGTAACAAGGAGAGCAGAGGAAAGAAACACCTTAATCC2070.19296561110437857No Hit
GGAAGTAAAAGTCGTAACAAACAGGGAGTTGTGGTGGGAAGGAGCTTGCA2000.18644020396558314No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC1610.15008436419229443No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCCTACGAGAACGTGGGGATGGATC1590.1482199621526386No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC1300.12118613257762903No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGTGGAAGGATC1140.10627091626038239No Hit
GGAAGTAAAAGTCGTAACAAGGGCTCTAATTAGACTCAGATGAAGAACGC1080.1006777101414149No Hit
GGAAGTAAAAGTCGTAACAAGGATAGCAGAGGCATCGATGAAGAACGCAG1080.1006777101414149No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)