FastQCFastQC Report
Sun 21 May 2023
EGAF00007833357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121657
Sequences flagged as poor quality0
Sequence length247-250
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC8881173.00114255653189No Hit
GGAAGTAAAAGTCGTAACAAGGGATAACTCATGGCTCAAGCAGAGCAAAA1526312.54592830663258No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG40143.2994402294976863No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA16791.3801096525477368No Hit
GGAAGTAAAAGTCGTAACAAGGGATAACACATGGCTCAAGCAGAGCAAAA15391.2650320162423865No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC9050.743894720402443No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC7480.6148433711171573No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC5320.4372950179603311No Hit
GGAAGTAAAAGTCGTAACAAGGTATCGCAGATTTCCAATGCCTGCTCGCC4720.3879760309723238No Hit
GGAAGTAAAAGTCGTAACAAGGTTCCAGACCGAAGAGATAGAGCTGCGAT3520.28933805699630927No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC2980.24495096870710276No Hit
GGAAGTAAAAGTCGTAACAAGGCAATAACGAGGGCTTTTTACATAGGTAA2320.19070008302029476No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGAAGGATC1800.14795696096402178No Hit
GGAAGTAAAAGTCGTAACAAGGGCCAGCGAATCTAATAATGAAGAATCAG1750.14384704538168785No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATC1630.1339832479840864No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTGAACCTGCGGAAGGATC1550.1274073830523521No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCGGAAGGATC1500.12329746747001817No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT1410.11589961942181706No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC1280.10521383890774882No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTTCGGAAGGATC1270.10439185579128206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)