FastQCFastQC Report
Sun 21 May 2023
EGAF00007833437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104452
Sequences flagged as poor quality0
Sequence length247-250
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG4561443.66981963006931No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC3504133.54746677899897No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC102249.788228085627848No Hit
GGAAGTAAAAGTCGTAACAAGGGGAGGTGTGGTGTTCCAAGCAAGGCAGG9780.9363152452801288No Hit
GGAAGTAAAAGTCGTAACAAGGTGTACATAAAAGGCGACGGCGGAAAATG7040.6739937961934669No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC6540.6261249186229082No Hit
GGAAGTAAAAGTCGTAACAAGGAAGATATGAAAAGGGGCCAAAACCAAGG6080.5820855512579941No Hit
GGAAGTAAAAGTCGTAACAAGGATAGGTGAAATCTCAGAGAAAGGGTAGA5240.5016658369394554No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC3620.3465706736108452No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC3340.3197641021713323No Hit
GGAAGTAAAAGTCGTAACAAGGCGATGGAGGGTAACGCGGCGGCACGCAC2700.2584919388810171No Hit
GGAAGTAAAAGTCGTAACAAGGACGAGGAGGGCAAGGAAAAGTGGAGGAG2490.23838701030138246No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACGGGAACGTGCGGCTGGATC2310.2211542143759813No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG2300.2201968368245701No Hit
GGAAGTAAAAGTCGTAACAAGGACAAAGAAAGATAATTACGCTCTGGGGC2260.21636732661892544No Hit
GGAAGTAAAAGTCGTAACAAGGAGGAACCAACATGACTGATGAAGAAAAA1480.14169187760885382No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC1310.12541645923486386No Hit
GGAAGTAAAAGTCGTAACAAGGGGGGGCAGTGGCGTCGGAAGGGGACGCG1280.12254432658063033No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGA1200.11488530616934094No Hit
GGAAGTAAAAGTCGTAACAACACTAAATCTTATCTCCAGCCCTCAGAAGG1140.1091410408608739No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGACCCTGCGGCTGGATC1130.10818366330946272No Hit
GGACGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC1090.10435415310381803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)