FastQCFastQC Report
Sun 21 May 2023
EGAF00007833480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences761970
Sequences flagged as poor quality0
Sequence length235-238
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA34057844.697035316351034No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG7924610.400146987414201No Hit
GCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGCCCGCGCT611928.030762365972413No Hit
GCTGCGTTCTTCATCGATGAAGGCTTAGCTGCTGCGTTCTTCATCGATGA609537.999396301691668No Hit
GCTGCGTTCTTCATCGATGCGAAGGCTTAGCTGCTGCGTTCTTCATCGAT540247.090042915075396No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT178072.3369686470595954No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG171442.2499573474021286No Hit
GCTGCGTTCTTCATCGATGAAGGCTTAGCTGCTGCGTTCTTCATCGATGC146311.9201543367849128No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT107121.4058296258382876No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG72690.9539745659277924No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT55500.7283751328792473No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG48220.6328333136475189No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT36620.48059634893762215No Hit
GCTGCGTTCTTCATCGATGCCTCCCCAGTATCTCCTGCTCTCTTTTGCAT31280.4105148496659974No Hit
GCTGCGTTCTTCATCGATGCGCTGGGCTATCCCTTCTGTCGTGGTCGTCT29600.3884667375355985No Hit
GCTGCGTTCTTCATCGATGAAGGCTTAGCTGCTGCGTTCTTCATCGGCTC29370.3854482459939368No Hit
GCTGCGTTCTTCATCGATGCGCTGGGCTATCCCTTCTGCCGTGGCCGTCT19810.2599839888709529No Hit
GCTGCGTTCTTCATCGATGCCAAGGAGCGGATTAAACCCTTCAGTAAGAC19730.25893407876950536No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG14950.19620195020801345No Hit
GCTGCGTTCTTCATCGATGAAGGCTTAGCTGCTGCGTTCTTCATCGCCTC14880.19528327886924682No Hit
GCTGCGTTCTTCATCGATGCGAAGGCTTAGCTGCTGCGTTCTTCATCGGC13570.17809100095804298No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTTCACTTCGCAAATCAAAATAA12050.15814270903053926No Hit
GCTGCGTTCTTCATCGATGGAAGGCTTAGCTGCTGCGTTCTTCATCGATG11990.1573552764544536No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC11270.1479060855414255No Hit
GCTGCGTTCTTCATCGATGCCGCAATGGTAGGGCATTTAGGCTCAGCAGC10610.13924432720448313No Hit
GCTGCGTTCTTCATCGATGCGGGGCAAGTAGACCAGCTACAAGCGGGTCC10450.13714450700158798No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG9990.1311075239182645No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACATGTGT9620.12625168969906952No Hit
GCTGCGTTCTTCATCGATGAAGGCTTAGCTGCTGCGTTCTTCATCGATGG9110.1195585128023413No Hit
GCTGCGTTCTTCATCGATGCGAAGGCTTAGCTGCTGCGTTCTTCATCGCC8370.10984684436395134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)