FastQCFastQC Report
Sun 21 May 2023
EGAF00007833486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97736
Sequences flagged as poor quality0
Sequence length235-238
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG7269874.38200867643448No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT29913.060284848980928No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTGGCTGCGTTCTTCATCGA14371.4702873045755915No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA13811.4129900957681918No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTCGCTGCGTTCTTCATCGA8250.8441106654661537No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTTGCTGCGTTCTTCATCGA7020.7182614389784726No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT7020.7182614389784726No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT6850.700867643447655No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT6390.6538020790701481No Hit
GCTGCGTTCTTCATCGATGCAAAGGTCACTGGCTGCGTTCTTCATCGATG5890.6026438569206842No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTAGCTGCGTTCTTCATCGA5560.5688794303020381No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTTCACTTCGCAAATCAAAATAA5190.5310223459114349No Hit
GCTGCGTTCTTCATCGATTTCACCCAACAATGCTTCAGGAGAAACGACAA4430.45326184824424975No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT3890.3980109683228288No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG3510.3591307194892363No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG3420.3499222395023328No Hit
GCTGCGTTCTTCATCGATGCAAAGGTCACTCGCTGCGTTCTTCATCGATG3300.3376442661864615No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG3280.33559793730048293No Hit
TCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG3240.3315052795285258No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTGGCTGCGTTCTTCATCGG3150.3222967995416223No Hit
GCTGCGTTCTTCATCGATGCAAAGGTCACTTGCTGCGTTCTTCATCGATG2740.28034705737906196No Hit
GCTGCGTTCTTCATCGATGCGAGATCCGAGATATCCGTTGCCGAGAGTCG2600.2660227551772121No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT2140.21895719079970533No Hit
GCTGCGTTCTTCATCGATGCAAAGGTCACTAGCTGCGTTCTTCATCGATG2070.21179503969878036No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTAG2030.2077023819268233No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT2030.2077023819268233No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG1980.2025865597118769No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA1880.19235491528198412No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTTGCTGCGTTCTTCATCGG1850.1892854219530163No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCT1840.188262257510027No Hit
GCTGCGTTCTTCATCGATGGCAAAGGTCACTGGCTGCGTTCTTCATCGAT1770.18110010640910207No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGTTG1740.17803061308013424No Hit
GCTGCGTTCTTCATCGATGCTTGGGAATAGGTTGCTGAACGAACGACTTT1660.16984529753622002No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG1580.1616599819923058No Hit
GCTGCGTTCTTCATCGATGCGTGAGCCGAGATATCCGTTGCCGAGAGTCG1520.15552099533437014No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTCGCTGCGTTCTTCATCGG1500.15347466644839158No Hit
GCTGCGTTCTTCATCGATGCGCAAAGGTCACTAGCTGCGTTCTTCATCGG1410.1442661864614881No Hit
GCTGCGTTCTTCATCGATGCGATAGCCGAGATATCCGTTGCCGAGAGTCG1390.14221985757550953No Hit
GCTGCGTTCTTCATCGATGTGAGAGCCGAGATATCCGTTGCCGAGAGTCG1360.1391503642465417No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG1350.13812719980355243No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG1350.13812719980355243No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCAAGAGTCG1340.13710403536056315No Hit
GCTGCGTTCTTCATCGACACGAGAGCCAAGATATCCATTGCCAGGAGTCA1340.13710403536056315No Hit
GCTGCGTTCTTCATCGATGCAAAGGTCACTGGCTGCGTTCTTCATCGGCT1230.1258492264876811No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGATAGTCG1200.12277973315871327No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCTTTGCCGAGAGTCG1160.11868707538675614No Hit
GCTGCGTTCTTCATCGATGCGAGAGCAGAGATATCCGTTGCCGAGAGTCG1120.11459441761479906No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCAGAGAGTCG1050.10743226651387411No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTTCACCTCGCAAATCAAAATAA1020.10436277318490628No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT1000.10231644429892772No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTTCCGAGAGTCG980.10027011541294917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)